Mark Diekhans
Mark Diekhans
**Description** perl 5, version 34, subversion 1 (v5.34.1) built for x86_64-linux ``` % perl --version perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE =...
if augustus is compiled with -DDEBUG, a number of tests fail with errors such as: ``` Traceback (most recent call last): File "/hive/users/markd/compartiveGenomics/projs/cat/augustus/Augustus-master/tests/examples/testcases.py", line 339, in test_utr_on self.process([ File "/hive/users/markd/compartiveGenomics/projs/cat/augustus/Augustus-master/tests/examples/testcases.py",...
`ogr.py -t tree -r cl CL:1001608 &>log` generate 3.2gb log of warnings before I gave up, first 10 lines are: ``` 2020-03-10 09:46:17 [WARNING] [PID:25137 TID:140260928632640] [ontol_renderers.py:256 in `_show_tree_node`] CYCLE:...
sqlean is awesome, why would anyone want to download just one module? It would be great to have tar or zip file to download all of the objects from one...
The semantics of ReadAlignment.id being local to the ReadGroupSet are different than other uses of `id' in the system and hence the field should not have the name`id' The implications...
The purpose of this ticket is to gather input for defining the missing technical requirements for the API schema definition and implementation (schema, methods, IDL, tool chain, etc). Please add...
This ticket is to collect observations on the round trip analysis for read data.
Sequence annotations need overview documentation and the schema documentation revisited.
Having only the binary SAM files in the tree makes maintenance difficult, as once can't diff mods etc. While it might be desirable to not require samtools to run, one...
I am attempting to use the Monarch API for the first time and am finding it rather difficult to learn from the documentation. It is a process of experimentation rather...