Mark Diekhans

tabix objects should have a close method so once can control the number of open files.

…en query fails fixes: #6

Include file name or URL in exception when index can't be opened will make debugging easier. Also have query errors include coordinate

Zoonomia prefix request

10

### Prefix znm ### Name Zoonomia Project ### Homepage https://zoonomiaproject.org/ ### Description The Zoonomia Project is an international collaboration to discover the genomic basis of shared and specialized traits in...

Toil tries to use caching by default even when it's not appropriate

3

Toil version 5.6.0, running cactus on SLURM fails onb gets the error: sqlite3.OperationalError: database is locked ``` [2022-09-01T14:24:28-0500] [MainThread] [W] [toil.leader] The job seems to have left a log file,...

explicitly run with python2.7

2

if a site has python 3 as the default, cactus will fail. see #98

progressive cactus doesn't support parallel make

1

64 cores available, one being used.. I can help fix this, but I need to know the order of the submodule build dependencies

need support for BED thick start/end

3

Please add support for BED thick start/end. In addition to being an important feature, I just ended up with a 1 gig log file filed with the messages: Input BED...

remove all files but the README

\textit does not work in a caption in bioinfo.cls

1

As described in this posting https://tex.stackexchange.com/questions/453542/unable-to-use-texit-in-caption bioinfo.cls defines an invalid font: ``` \renewcommand{\sfdefault}{phb} ``` resulting in \textit not working in figure captions `xfun::session_info('rticles')` ``` R version 4.2.0 Patched (2022-04-28 r82285)...