HiCBrowser

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Hi, I have a query that I am having 2 samples (control.cool and treatment.cool) and ran hicCompareMatrix command and obtained a combined matrix file (combine.cool) and then used hiCPlotMatrix to...

KaurKaram

[WIP] Update

1

Hi, I wanted to update the Browser to be able to have a browser which matches pygenometracks. But I do not know anything about javascript. I fixed the browser part...

lldelisle

Hi, I would like to plot links for chomatin loop. How can I write region_tracks.ini file?

zhixuqiu

Use a production WSGI server instead.

1

Hi, I am trying to run HiCBrowser but keep getting this error message: * Serving Flask app "hicbrowser.views" (lazy loading) * Environment: production WARNING: Do not use the development server...

elyas101

move to .yaml for config?

1

Current config (.ini) file has it's own format, while yaml is a popular and easy to use format. Plus I am not sure if current config allows a hierarchy in...

vivekbhr

no need for browser_config.ini

2

apart from the config file for the gene view and region view, there is no need for a third config file. HiCBrowser should directly be run with these two config...

vivekbhr

hardcoded example names

1

If we want to reuse a container for multiple genomes and datatsets we need to encode the example regions and genes in dynamic way.

bgruening

uwsgi integration

4

This branch is used in the HiCBrowser Docker image, as we are using nginx as proxy server and uwsgi as application server inside of the image. Unfortunately, I was not...

bgruening