David Kartchner

icon indicating a website link davidkartchner.com

icon company @truveta icon location Seattle, WA, USA icon location I'm a Postdoctoral Researcher at Truveta. My research uses LLMs to extract, normalize, and structure data for clinical and biomedical domains.

Results 10 comments of David Kartchner

include pip installs in `conda env export --from-history`

This would be MUCH appreciated. Current conda export behavior is one of my main obstacles to to cross-platform compatibility.

Create dataset loader for GENIA Coreference Corpus

#self-assign

Create dataset loader for plant normalization

#self-assign

Create dataset loader for Plant-Disease corpus

#self-assign

Potential Authorship Contributions

@rosalinesway What is the deadline for implementing 3+ datasets to receive authorship? I discovered this project today, but will finish a PR for one dataset tomorrow and could implement two...

Create dataset loader for PPR corpus

#self-assign

Create a dataset loader for CRAFT

#self-assign

problem with FTDRF.py and FTDRF.sh file?

I just updated FTDRF.sh, so the changes should be fixed. Thanks for the feedback.

Issues in structure.py and FTDRF_test.py?

Hi Ryan, Pardon the slow reply. I found the bug in the code and updated it. The update should be merged back into the repo by the end of the...

Error in text capture

Thanks for your response Rahul. I have attached a sample of the data that is causing problems. It is a subset of the MedMentions dataset formatted as per the LEAN-LIFE...