David Steinberg
David Steinberg
My loose proposal is to add an API and direct access method for Experiment, that will force us to do the modeling so that the object won't be nested improperly...
This is an aspirational feature of the field. The idea is that as the same feature is resolved in another database, a server operator can append that identifier to the...
We might consider adding an external identifier message to RNA expression levels so a similar pattern of access is opened. The use case we would like to provide is being...
@mbaudis @ejacox @kozbo It would be great to land on one side or the other here before release. Just use reference names seems like it would make people the happiest...
@ejacox if there is a way to elegantly solve it using that mechanism, I'm not against it. My hope is that we can treat this problem simply as using the...
After discussing this with you and @mbaudis I was able to quickly convince myself that multi-sample BAMs are a common use case. For example, GATK includes the argument `sample_name`. `--sample_name...
We can close this by pointing to the BAM documentation of the SM tag.
nb After talking about this with a toil user, there's a lot of fine-grained control of how things are launched in a cluster that would be difficult to usefully generate...
I also had this error trying to apply the template. I cannot use this dev container template currently
I believe this is more about the benefits of having your type system represent the domain. It can become easier to reason about, construct queries against, etc. @jmarshall your point...