David Steinberg

We have integration tests now, we can close this with a test harness and an example test on cwl_runner.

Came to post a similar issue. I searched "bismark" and got 5454 results (everything?) https://www.bioconductor.org/help/search/index.html?search-bar=bismark/ Tried to go to second page and got a timeout/error https://www.bioconductor.org/help/search/index.html?q=bismark&start=20/

@mcupak take a look at our gh-pages fork for the Data Object Service :) https://github.com/ga4gh/data-object-service-schemas/tree/gh-pages

The g4 schemas have a string:List tag that is on the `Dataset` message for exchanging arbitrary data that is not in named fields. https://github.com/ga4gh/schemas/blob/master/src/main/proto/ga4gh/metadata.proto#L45

Hi @micheldumontier ! As I understand it, I currently annotate the responseType, which provides a single level of annotation. I am curious whether it might be possible to specify the...

For what it's worth I ran this by @newgene in person at the RDF Summit 3. If I recall correctly, the current implementation relies on the OpenAPI `x-` extensions to...

If I understand correctly, if one simply uses JSON-LD context that points to an existing URI, then we can forego the x-responseType?

This would be a great one! +1

Currently, `experiment` is an attribute of a `ReadGroup` that embeds the `Experiment` document in a read group. Read groups currently have a `bio_sample_id`, which allows an experiment to be implicitly...

I also see the value of an experiments endpoint as it provides a way to track multiple efforts within the same dataset. However, given that `Experiment` is a nested document...