David Steinberg comments

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                                            David Steinberg

Peer service improvements

This is intended for a future release, we haven't implemented the `remote_address` functionality yet.

protobuf java square write code-gen

Google ships the struct.proto here https://github.com/google/protobuf/blob/master/src/google/protobuf/struct.proto which is included when you do `protoc`.

protobuf java square write code-gen

Protobuf gives you a nice way to namespace packages, and including them is done with a `-I` just like one might imagine for compiling C code. I would like to...

Readgroups Endpoint

Given the current data model, `bio_sample_id`, `name`, and `dataset_id` are all named fields in the `ReadGroup` message. This means they can be searched using these fields without restricting to a...

Readgroups Endpoint

@diekhans So do you think making the `dataset_id` required and the `read_group_set_id` optional makes more sense?

Readgroups Endpoint

Thanks Paul, that's very interesting. The decision on whether to include the `read_group_set_id` in the request seems like the last contention. Based on @diekhans observation, there is a good case...

Readgroups Endpoint

@pgrosu That's very interesting, I agree! I currently have enough resources to approach this in such a way so as to verify the basic access patterns, however, I am interested...

Add new endpoint(s) to sequence annotations to allow for search by gene name etc...

In principle this has been implemented such that we can specify a geneSymbol. However, these endpoints should accept members of a controlled vocabulary. https://github.com/ga4gh/ga4gh-schemas/pull/761

any thoughts about using schema registry to maintain avro schemas

Thanks @wanghaisheng ! We are currently in the process of moving to protocol buffers so we won't be using avro to define schemas. We can use this public repo to...