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Published 20 hours ago • verified publisher icon dasmoth

"Karyotype" views

Open dasmoth opened this issue 10 years ago • 1 comments

Should be able to do both a small chromosome overview (as was implemented in Dalliance 0.7 and earlier), and an overview of all chromosomes.

Does it make sense to share code between these two?

Banding patterns, etc., should probably be fetched from a bigbed file. Example:

      http://www.biodalliance.org/datasets/GRCh37/karyotype.bb

dasmoth avatar Mar 25 '14 14:03 dasmoth

I took the old Dalliance 0.7 code base and added a couple of new features. Now it can show an ideogram of one or all chromosomes. For now it is stand-alone, but due to an event model it is easy to make this work together well with Dalliance.

https://github.com/andreasprlic/karyotypeSVG

andreasprlic avatar Apr 10 '15 05:04 andreasprlic