Charles Tapley Hoyt
Charles Tapley Hoyt
Here's the OLS page for the Cell Ontology's term for [osteoblast (CL:0000062)]( https://www.ebi.ac.uk/ols4/ontologies/cl/classes?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000062). The Bioregistry has multiple "providers" for the Cell Ontology. This means that it has URL formats that...
I found that CLO makes cross-references using the `rdfs:seeAlso` predicate instead of something a bit more fit-for-purpose like `oboInOwl:hasDbXref` or `skos:exactMatch`. I also found that these `rdfs:seeAlso` annotations point to...
The following two entries in CLO both appear to be the same immortal cornea-derived cell line, with the same xrefs and only a few different words in the description. Can...
There's a step in reproduction that requires users to manually download data and place it in a location relative to the code itself. These manual steps aren't so good for...
The [installation guide](https://pidginv3.readthedocs.io/en/latest/install.html) can be greatly reduce in complexity and length by packaging the code and making it pip-installable. This should probably be done after #7 and #8. I've written...
Python 2's end of life support happened last year, so it would be good to make this code run on modern versions of Python. I'd be happy to submit a...
There are lots of considerations when writing code, and having a consistent style is usually towards the bottom for scientific work. Luckily, there's a tool called [`black`](https://github.com/psf/black) that can automatically...
The documentation says that this file was created from ChEMBL 24, PubChem, and DisGeNet . There have been several releases since with more data, which could improve the goodness and...
Google drive might be convenient for uploading, but access is flaky and could change at any time. Instead, it would be good to host the two files at FigShare or...