Charles Tapley Hoyt
Charles Tapley Hoyt
I think this is an easy fix, though. I'm also wondering why the requirements aren't included in the setup.py? It seems they're commented out. In a packaging context it's best...
Closes #87
References #103. This PR adds a ``w3c_validation`` flag to instantiation of a converter and to `Converter.expand()` that turns on W3C CURIE specification validation. For now, it's not a "true" implementation...
https://github.com/monarch-initiative/monarch-gene-mapping/pull/34#discussion_r1416026076
```python r1 = Record( prefix="geo", prefix_synonyms=["GEO"], uri_prefix="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=", pattern="^G(PL|SM|SE|DS)\\d+$", ) r2 = Record( prefix="geogeo", uri_prefix="http://purl.obolibrary.org/obo/GEO_", pattern="^\\d{9}$" ) c1 = Converter([r1, r2]) remapping = {"GEO": "ncbi.geo", "geogeo": "GEO"} c2 = remap_curie_prefixes(c1, remapping)...
References #63 This pull request does the following: - [x] Make strictness configurable for pandas expansion, compression, and standardization functions - [ ] When not strict, report a summary of...
It might be worth having a way to hash an EPM so they can be quickly indexed / compared for equality ``` def get_hash(self) -> str: import hashlib from operator...
I've excerpted this from #49 - this code tests public SPARQL interfaces are able to use the Bioregistry. I'm not sure if this belongs in this package, though ```python """Tests...
In the following code block https://github.com/biopragmatics/curies/blob/5f20618271b9481e0871728a9be3fabdd605d880/src/curies/mapping_service/api.py#L106-L119 Add the following `else` clause: ```python elif subj_query is not None and obj_query is not None: if obj_query in self._expand_pair_all(subj_query): yield subj_query, pred_query, obj_query...
Currently getting the following output when trying to install this package after pulling. I guess it can't build on an M2 mac. Changing `psycopg2` to `psycopg2-binary` in the installer seemed...