Charles Tapley Hoyt
Charles Tapley Hoyt
EMMAA is trying to import this and can't because there's a missing mid-level import ```python-traceback --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) Input In [8], in ----> 1 gene_prior.make_config() File...
Should probably point this back to something in the canonical repo https://github.com/indralab/indra_db/blob/8d41e19a64d252288e0156e79db64dde610b55ce/.github/workflows/tests.yml#L31
I think it's reasonable to say that when people make curations to the INDRA Database, they are doing so for the public good. Most biocuration efforts are moving towards more...
It might be nice to have a copy of this on PyPI. I considered that most users won't have access to our copy of the database, but it might be...
code that does this isn't prepared for general reuse
Right now, the children of VO:0000001 (vaccine) imply several sub-hierarchies, including: 1. Vaccines organized by what disease they immunize against - #620 2. Vaccines organized by what pathogen they immunize...
Here's the remaining notes from my work document that weren't categorized: > probability of Y given X -> regress Y on x > probability of Z > 1. how to...
Closes #123 > Counterfactual Transportability: A Formal Approach J. Correa, S. Lee, E. Bareinboim. ICML-22. In Proceedings of the 39th International Conference on Machine Learning. Columbia CausalAI Laboratory, Technical Report...
This takes some code out of #210 for later: ```python def get_single_door_learnable( graph: NxMixedGraph, data: pd.DataFrame ) -> dict[tuple[Variable, Variable], float]: """Estimate parameter values for a linear SCM using backdoor...
https://en.wikipedia.org/wiki/M-separation - how is this different from d-separation and sigma separation?