Charles Tapley Hoyt
Charles Tapley Hoyt
A Dockerfile would be really useful to provide so the entire database could be built from scratch (all dependencies, resources, etc.)
When I use ROBOT’s convert function to turn an ontology into OBO Graph JSON (which in turn is based on the code in this repository), how do I know which...
This PR implements a pseudo-static type checker that takes a given dictionary to instantiate a given class and checks if it is correctly formatted. It raises an exception if it...
I'm emulating a lazy reviewer by only reading the README - I'd much rather bring my own data than use something built in. It would be great to have a...
It doesn't appear that there's any documentation on the README or link to external documentation. Would you please provide some?
Right now it's not so obvious how to install or use the code besides as a script. It would be good if the code were properly packaged and made pip...
This field is required in `Mapping` instances but the documentation at https://mapping-commons.github.io/sssom/mapping_justification/ does not have any information on what I'm supposed to put in it or why.
## Mapping Chains Transitivity of equivalence - skos:exactMatch skos:exactMatch -> skos:exactMatch Broad - skos:exactMatch skos:broadMatch -> skos:broadMatch - skos:broadMatch skos:exactMatch -> skos:broadMatch Narrower - skos:exactMatch skos:narrowMatch -> skos:narrowMatch - skos:narrowMatch...
In BEL, it's common to see chains like: ``` # protein X phosphorylates protein Y act(protein(X)) -> protein(Y, pmod(Ph)) # protein Y becomes active when it's phosphorylated (the part I'm...
As an addition to [RO:0002447 (phosphorylates)](http://purl.obolibrary.org/obo/RO_0002447) and [RO:0002480 (ubiquitinates)](http://purl.obolibrary.org/obo/RO_0002480), that occur under [RO:0002436 (molecularly interacts with)](http://purl.obolibrary.org/obo/RO_0002436), I would suggest adding relationships for the following post-translational modifications, which all have corresponding...