Charles Tapley Hoyt
Charles Tapley Hoyt
The `dataset.py` script requires a folder called `zinc/` but it's not included in the repository. Is this some data that should be downloaded from ZINC? Would you be able to...
Right now, when I get an error from `robot convert`, I have to add `-vvv` to get logs to figure out what is broken in the ontology, but this includes...
The Cellosaurus ontology contains many invalid lines, e.g. the following line has improperly escaped curly braces in the molecule's name: ``` comment: "Group: Patented cell line. Registration: International Depositary Authority,...
It would be great if it were possible to install robot with homebrew (https://brew.sh/) with a command like `brew install robot`. This would greatly simplify the need to putz around...
This is one of the follow-up items to #1836, so review of this PR should wait until there's a decision on that one Blocked by #1969
I was just reading through the repository linked for PROCO in the new ontology request https://github.com/OBOFoundry/OBOFoundry.github.io/pull/1834, and it seems that the ontology has very little information on how the ontology...
This would be pretty difficult to get for old ontologies, so maybe we have to add a dummy value, but it would be very valuable to have the date added...
It would be nice to automatically generate a `.bib` file containing the citations for all ontologies in BibTex like in ```bibtex @article{Diehl2016, author = {Diehl, Alexander D and Meehan, Terrence...
Closes #1967 **What**: This PR crawls the git history from this repo to figure out when each ontology metadata file was created, then annotates it into the frontmatter of the...
When this issue was opened, 151 active ontologies in the OBO Foundry did not have a `publications:` entry in their metadata. This field is used to generate the citation information...