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Add Dockerfile

Open cthoyt opened this issue 6 years ago • 3 comments
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A Dockerfile would be really useful to provide so the entire database could be built from scratch (all dependencies, resources, etc.)

cthoyt avatar Mar 13 '19 11:03 cthoyt

In my experience, it is really challenging to install pypath. We have some interns who are neither computer science students nor software engineers and are doing to figure out pypath. They always need our help. A docker image would be worth for any developers.

ntung avatar Feb 20 '20 20:02 ntung

Hi @ntung, we are currently working on it. The docker image will be provided soon. In the meantime, can you maybe provide your usual setup (OS, python version, etc.)?

ivanovaos avatar Feb 20 '20 22:02 ivanovaos

In my experience, it is really challenging to install pypath.

Since we recently removed igraph and hence cairo from the mandatory dependencies it's not so challenging any more. I think on any operating system one can simply do pip install git+git://github.com/saezlab/pypath.git

deeenes avatar Feb 20 '20 23:02 deeenes

Closing as solved

npalacioescat avatar Feb 15 '24 13:02 npalacioescat