Cornelius Roemer

Thanks for the suggestion. I'm not sure if you're aware that all the information needed to reconstruct the input and alignment fasta is available from the following fields: - substitutions...

Out of curiosity, I looked at how we output the aligned peptide in this case of truncation. We seem to call the truncated parts as deletions. Is that on purpose?...

The only other tooltip that the strain name is included in looks sort of ok, still a bit not so nice with the text wall but at least the web...

Thanks @dpark01 for the idea Stacia Wyma, Anthony Fries, Genay Pilarowski, Duncan, Bryan, Nidia from Spheres expressed interest in this feature via Zoom chat Possible benefits (magnitude/importance to be determined):...

Another Nextclade user asked about this on our discussion forum: https://discussion.nextstrain.org/t/is-there-any-way-to-locally-view-the-result-like-clades-nextstrain-org/1233/3

Now it stopped after 18 sequences, always at similar but not exactly same point

I see, I'll tag it `hard problem` and we can see later on, it's a shame that due to fast performance it now becomes less usable when we analyse large...

Possibly related to #608

I'm not very familiar with proxy servers and how they might interact with curl here. Have you tried setting the following flags? ```bash CURLOPT_SSL_VERIFYPEER=0 CURLOPT_PROXY_SSL_VERIFYPEER=0 CURLOPT_SSL_VERIFYHOST=0 CURLOPT_PROXY_SSL_VERIFYHOST=0 nextclade get ......

@stefandiederich had a similar problem being behind a proxy before. Ivan gave some tips back then, but I'm not sure how it got resolved, see here: https://github.com/nextstrain/nextclade/discussions/552 https://github.com/nextstrain/nextclade/issues/532 Maybe he...