Cornelius Roemer

I see! So the actual `augur translate` makes sure there is a link by doing the translation on reconstructed nucs, therefore only reconstructing once, while `ncov` reconstructs twice, now, and...

@ivan-aksamentov would it maybe be an idea to turn nextclade web into a progressive web app, that works offline?

Don't think it's due to me running out of memory. Maybe we could set overscan as a user setting? :) I'd love 100 😍

Seems to be more complicated than cranking up overscan, just increasing overscan doesn't solve it, see this branch: https://github.com/nextstrain/nextclade/tree/feat/more-overscan

Alright, if it's complicated it's fine as is, this is not really a priority.

For maximum performance I would indeed not rely on `nextclade`'s compression. This is more for convenience when doing mid-size analyses, I'd say. If you want fast compression, use `zstd` by...

I did quite an extensive comparison of `xz` and `zstd` at multiple compression levels on aligned and unaligned SC2 sequence data. `zstd` is better on sequence data in almost all...

Es fehlt anscheinend auch `07740` in Jena, macht das Datenset etwas kaputt für meine Zwecke :/ Edit: `07740` scheint theoretisch nicht zu existieren, wird aber praktisch vom Universitätsklinikum genutzt.

This problem has been seen in pangolin too https://github.com/cov-lineages/pangolin/issues/313 and here https://github.com/jts/ncov-tools/issues/94

Very good question @qifei9 - it would help unpin some pins that have been around for a year. @johanneskoester can you help here?