Cornelius Roemer

To reproduce, you can use this sequence [short.txt](https://github.com/nextstrain/nextclade/files/8063045/short.txt) Or this one, maybe better since it contains some S mutations [short.txt](https://github.com/nextstrain/nextclade/files/8063067/short.txt)

Spotted someone raising this issue independently in the wild. Would be great if we could display alignmentStart/End on the gene view https://github.com/cov-lineages/pango-designation/issues/843#issuecomment-1196584005

What about adding a delay on purpose during which time one can move the mouse over the tooltip to fix it in place until the mouse moves away? This would...

I see, hmm, copying just the mutation badges seems to work. I get something like this which is quite ok: ``` C300T | C5643T | T7302C | G12793T | A13428G...

It's pasted as a markdown table, at least into this little boxy box here on Github. C300T | C5643T | T7302C | G12793T | A13428G -- | -- | --...

I think advanced inputs should be deleted since they are dataset specific Also advanced inputs are used maybe 100x less frequently so it's ok to clear, no usability problem there.

You're right, they are surfaced in the sequence name tooltip - that's better than nothing but not really that obvious and easy to see. One shouldn't need to look at...

> Are they not displayed as gray areas on both ends? Or is it too small to notice? Yes they are, that's how I noticed in that case described above,...

Good point, we don't have a column for this (yet). Given that coverage is a metric that may be of interest and involves 5 numbers we may want to add...

So right now we count: - Ns - ambiguous nucleotides - inserted nucleotides - deleted nucleotides It would make sense to also count: - sequenced nucleotides minus inserted nts plus...