ms2rescore
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compomics
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
Prepec modification error: Multiple modifications per site not supported in Peptide Record format.
Hi, I am trying to use ms2Rescore to rescore the output i get from a searchGUi / peptideshaker analysis here is the log of ms2rescore in debug mode ``` Running...
Hi, Where can I change the enzyme parameters in the GUI application for peptidomics data? I've tried to input in the Mokapot FASTA parameters the Enzyme as '.' (as written...
Hi, running rescore on Sage results, the program crashed trying to download something? our servers are disconnected from the web, so we can't have software connecting to the outside. ...
> Hi, ralph > Hope you are doing well, > > First, since I was testing your windows installation to make a protocol for a gui user, things like pip...
### Added - ✨ New `tims2rescore` CLI entrypoint with TIMS-specific configuration defaults - ✨ [IM2Deep](https://github.com/compomics/im2deep) feature generator for ion mobility - ✨ Support for Bruker raw (`.d`) and miniTDF formats...
Hello, i am using MS2Rescore 3.0.0 GUI (same error on CLI) with MS Amanda processed DIA data (resulting CSV contains two new rows, which should not be a problem), therefore...
Hi, I have been trying to do rescoring using the MS2rescore user interface on some MaxQuant results, but I keep getting this error message: "File "psm_utils\io\maxquant.py", line 98, in _evaluate_columns...
Hi, I've been trying to run MS2Rescore from the Command Line, and I ran into an issue. I'm using MaxQuant search results, and it looks like I have to specify...
I'm getting an uncaught exception when trying to use ms2rescore.feature_generators.ms2pip.DeepLCFeatureGenerator. The error happens when there are not enough peptides in psm_list for the calibration set. Here's how I create the...
Currently, when MS2PIPFeatureGenerator calls ms2pip.correlate(), the latter may download xgboost_models_files from the Internet if they are not present in the model_dir directory. Can we please have a control to disable...