moFF

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Hi, I'm having trouble locating the raw files (3 runs of the CPTAC study 6) that correspond to the sample files provided. The link to 'raw files' takes me to...

ArminGuntram

Hi! I several samples hat I want to analyse with moff but the raw files come from fraction analysis. So for each sample, I have one PSM file but i...

KunathBJ

Settings to accelerate execution time

2

We are using moFF on a larger dataset (27 label-free runs) and it takes a very long time (about 40h), even with setting for 16 threads and 150GB RAM. Are...

veitveit

Backwards incompatible changes in pandas cause building the Dockerfile to fail

2

I ran into problems when trying to setup moFF. At first I assumed it was a problem with my local system. However when I decided to try to build the...

YaPaHa

Question about PTM file

5

Hi, How important is the ptm_setting_mq.json file for match filter after matched between runs? The reason I ask is that it is required, but the search algorithm I use denotes...

jblakele

PeptideShaker moFF interaction via CLI

30

As mentioned here in https://github.com/compomics/searchgui/issues/107 it would be great if we can pass PeptideShaker outputs to moFF via CLI. We could either pass the zip file or a special PS...

bgruening