Carl Mathias Kobel
Carl Mathias Kobel
> What would you want to happen if there was > 1 match to your pattern? Inform and exit.
That is a very specific question. Let's say a hundred?
I see. Never thought of that. I guess, if i keep my IDs unique anyways, its not a problem to have all of them in the same folder.
When I run DRAM on a simple E. faecium strain 116 isolate genome, I get the following KeyError when DRAM processes peptidase hit descriptions. ``` 0:13:54.990374: Getting descriptions of hits...
I'm having trouble allocating enough ram to run `update_description`. Is it correct that more than 500 GB is needed? --- Regarding the machines: Both systems were CentOS Red Hat with...
OK. The machines (head nodes) are both limited to some 377GB ram. I wonder what algorithm update_description uses? Does it really need to load the full uniref into ram at...
I understand the point of splitting the files, but the problem is that any computer will run inefficiently when more threads are spawned than what the hardware can support. I...
@BiocondaBot please add label
In response to https://github.com/jotech/gapseq/issues/60
Awaiting review.