Carl Mathias Kobel
Carl Mathias Kobel
@bgruening now when r-chosz is added to conda-forge, we can add gapseq to bioconda. What do you think?
@BiocondaBot please add label
@bgruening does everything look good to you?
The linter for the push of this merge yields > "No hosted parallelism has been purchased or granted. To request a free parallelism grant, please fill out the following form...
Whereas @nanzhen102's issue is that the java vm for minced can't start at all, and that the output to stdout messes with the version parsing of prokka, I'm having a...
Thanks for the quick answer! Okay that explains why I have such a hard time finding a mapping between Uniref and Kegg orthology. Looking forward for testing the new protein...
After checking out the culprit line: https://github.com/chklovski/CheckM2/blob/319dae65f1c7f2fc1c0bb160d90ac3ba64ed9457/checkm2/fileManager.py#L131 I realize that this is the final action in the "download if-statement block", so I can possibly ignore this "OSError". The problem is...
I think that could be a solution. The reason why I like using `checkm2 database --download` is that you can then only download the correct version. If one is inadvertently...
@jotech in order for a bioconda package to be effective you should make frequent releases (maybe, at least once a year). The current release (https://github.com/jotech/gapseq/releases/tag/v1.2) is more than two years...
Same problem. In many different environments. Also new ones.