Carl Mathias Kobel
Carl Mathias Kobel
I should probably mention that this package recipe is only available for linux. If macos support is necessary, we can work on it.
Sounds like a good plan. I'll look out for your next release and update the bioconda recipe then. I assume you will update the installation instructions so I know which...
Do you have the Cobrar release planned? Otherwise I think I would like to use your master version (not release) in the conda package as there has been [significant updates](https://github.com/jotech/gapseq/compare/v1.2...master)...
OK I'm a bit busy wrapping up my phd thesis, but I'll update the bioconda recipe asap.
Looks like cobrar v0.1.1 is out?
Will you make a new release on github, so the new version with cobrar is integrated? I will make sure the dependencies are fixed in the new conda package.
The bioconda is working great now! https://bioconda.github.io/recipes/gapseq/README.html
Are you going to pull, or do you want me to remove the request?
What about an annotation-agnostic section? Files look much the same anyway.. Just copy over the prokka one.
There is no way to see the number of genes in ncbi accessions. Only via checkm but that is not from the actual annotation. An annotation agnostic one could be...