Colin Diesh

In this particular CDS, the "mature_protein_region_of_CDS" is a subfeature of CDS features Example of NCBI, from enterovirus https://jbrowse.org/code/jb2/main/?config=https%3A%2F%2Fjbrowse.org%2Fhubs%2Fgenark%2FGCF%2F000%2F861%2F205%2FGCF_000861205.1%2Fconfig.json&session=share-bDo34JtJ2_&password=JRzRk ``` ##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ViralProj15297 #!genome-build-accession NCBI_Assembly:GCF_000861205.1...

Create "LLM docs"

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example here https://pixijs.com/8.x/llms i imagine this is like a single file you can upload into e.g. google gemini and use as context for your queries

Possible idea for 'lazy loading' tracks from connections

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## Background JBrowse 2 has "connections" which allow sets of tracks to be "attached" to a running session. When this happens, the set of tracks is fully loaded into the...

The jbrowse-plugin-mafviewer is a plugin that allows viewing multiple sequence alignments, and has been somewhat experimental but has proven to be useful, but it may be worth making the jump...

Method to get information about an assembly

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Make a thing to get "About assembly" similar to "About track" There is the assembly manager, but the "edit" is disabled, so hard to access any assembly config. I think...

Potential bug: change to volvox-sorted.bam breaks jbrowse-img test

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Unclear why but we re-generated volvox-sorted.bam and it's bai in #5090 to test alternative MM tags, and it caused @jbrowse/img tests to fail with error " Error: problem decompressing block:...

currently defaults to auto-adjust to display height, which might not be desirable. It would be nice if this type of problem could be solved in a general way. The true...

For example, if a genome browser with multiple gene tracks is indexed, there will be a separate entry for each track This can get overwhelming for the user when they...

Phased mode creates multiple rows from a single sample. This might be confusing the "Edit colors/arrangement" dialog's ability to re-order rows

This is another race condition I was reminded of, relatively rare, but bigwig tracks can run into a situation where stats are updated block 1 is rendered stats are updated...