Colin Diesh

this is a good idea.... I have an older issue here to add generic 'grouping' to assemblies https://github.com/GMOD/jbrowse-components/issues/1883 i'm not sure the visual mockup in that issu is a great...

(there is also some brainstorm of whether these big loops capture the visual effect properly, and need for legends..ideas welcome)

Fixes https://github.com/GMOD/jbrowse-components/issues/3490

needs work to determine/calculate what the actual 'track height' is for the virtual scrollbar. it is not available on the model from what i can tell

note that the file from what i could tell worked on web also

that is a good idea. https://llmstxt.org/ https://agents.md/ there are actually multiple objectives because we are trying to make a thing that can automate usage of the jbrowse itself (e.g. chat...

example of showing larger scale SVs in a multi-variant type way, this example with inversion polymorphism (from https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-02919-8/figures/1)  [1]  example of multi-bed 

could look into more hprc data from More here https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC3/release/

>I picture it to myself as a heatmap with proportions of ALT calls in each cell (e.g. 0/0/0/1 is at 25% on the color scale). Obviously not applicable to multiallelic...

that's awesome. I believe I saw a talk from your group at PAG just last week! feel free to email if interested, especially if it has mixed ploidy would be...