Colin Diesh
Colin Diesh
how to load a bedMethyl track into multi-wiggle (via UI, or via hand edited config...). we could detect file extension .bedMethyl and have special behavior this but that extension is...
The embedded tutorial needs updating to the new package namespace @jbrowse/react-linear-genome-view -> @jbrowse/react-linear-genome-view2
currently we are not able to easily see what the inserted bases are e.g. directly in the genome browser so this could be a helpful alternative at least for one-by-one...
One potential subtask of this is to get info about refNameRenamings. We do not currently, AFAIK, have a method to get all aliases of a specific refname which might be...
mcgv from ncbi another point of reference
not exactly sure what you mean by 'first instance' my basic vision is something kind of like https://github.com/cmdcolin/jbrowse-plugin-mafviewer but it can show things like gene models instead of just the...
Do you have any example data files (and/or pipelines that generate such data files) that jbrowse might be able to leverage?
(mafviewer for example can load the output of cactus pipelines....potentially that is a good start to this whole thing, but we'd want to get gene structures/annotations which are not represented...
REBASE link http://rebase.neb.com/rebase/rebase.html
note that we used to publish src dirs but it was removed after overture (https://www.overture.bio/) team said it caused them trouble