Chuiqin Fan comments

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                                            Chuiqin Fan

An error happens when irGSEA.density.scatterplot

Can you provide your version of R package Nebulosa?

An error happens when irGSEA.density.scatterplot

You can also try running this code to see where the error occurs. ``` library(Seurat) library(SeuratData) library(RcppML) library(irGSEA) data("pbmc3k.final") pbmc3k.final

Why don't the loom file be opened

Hi,I have the same problem.

GSVA error with ssGSEA

This problem occurs because the GSVA package deprecated the GSVA function in version 1.52.2 or higher. I updated irGSEA to make irGSEA (version 3.2.6) suitable for both old and new...

The asterisk and less than sign overlap at the p-value of the legend in the heatmap plot

This looks like the image is too crowded. Have you tried adjusting the heatmap.width and heatmap.heigh parameters in irGSEA.heatmap function?

Thank you for using this tool. irGSEA aims to comprehensively score the results of multiple gene set scoring methods to help researchers quickly identify important and interesting gene sets. Unlike...

Seurat 5.0.1，Error: $ operator is invalid for atomic vectors

在Seurat 5.0版本的条件下，我测试了VISION，发现可以正常运行： ``` > library(irGSEA) > library(tidyverse) > library(SeuratData) > data("pbmc3k.final") > pbmc3k.final3 packageVersion(pkg = "Seurat") [1] ‘5.0.3’ > packageVersion(pkg = "VISION") [1] ‘3.0.1’ > packageVersion(pkg = "irGSEA") [1] ‘3.2.5’...