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Why don't the loom file be opened

Open ClaireZQ opened this issue 4 years ago • 5 comments

loom=open_loom(loomPath, mode='r') Error in H5File.open(filename, mode, file_create_pl, file_access_pl) : HDF5-API Errors: error #000: ../../src/hdf5-1.10.0-1/src/H5F.c in H5Fopen(): line 579: unable to open file class: HDF5 major: File accessibilty minor: Unable to open file

error #001: ../../src/hdf5-1.10.0-1/src/H5Fint.c in H5F_open(): line 1208: unable to read superblock
    class: HDF5
    major: File accessibilty
    minor: Read failed

error #002: ../../src/hdf5-1.10.0-1/src/H5Fsuper.c in H5F__super_read(): line 443: truncated file: eof = 26403075, sblock->base_addr = 0, stored_eof = 26409219
    class: HDF5
    major: File accessibilty
    minor: File has been truncated

ClaireZQ avatar Jun 22 '20 06:06 ClaireZQ

Hi,I have the same problem.

chuiqin avatar Jun 27 '20 09:06 chuiqin

Hi, I also have such problem.

xulahong avatar Jul 12 '20 18:07 xulahong

+1

Momomocheng avatar Aug 10 '20 01:08 Momomocheng

Hi, I also have the same problem.

dongwei1220 avatar Jul 01 '21 03:07 dongwei1220

Here is the full codes:

file <- system.file("extdata", "example.loom", package = "SCopeLoomR")
loom <- SCopeLoomR::open_loom(file, "r+")

Yunuuuu avatar Jun 15 '24 10:06 Yunuuuu