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chrchang
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is n...
Hi @chrchang , Our team really enjoys using the pgenlib python library in this repository. In fact, we like it so much that we've integrated it as an optional dependency...
Hello, `sysconf(_SC_NPROCESSORS_ONLN)` returns, when possible, the underlying hardware number of online cpu cores, which might not corresponds to the actual number of cores available to the process (through the use...
Hi, This is the full error message. "Error: REF allele on line 1071 of --pgen-diff .pvar file conflicts with loaded REF allele, and neither are flagged as provisional." Can you...
Dear @chrchang, I was happy to find the `pgenlibr` R package to read `.pgen` files and I intend to use it in one of my packages. The reading of `.pgen`...
Dear @chrchang, I was happy to find the `pgenlibr` R package to read `.pgen` files and I intend to use it in one of my packages. The problem is that...
I have a quite large dataset that I have manually split into ~1000 bcf files. When I try to select (for example) a subset of the data that is above...
Every time I try to build 2.0, I get the error ```include/plink2_zstfile.h:32:12: fatal error: 'zstd.h' file not found``` I installed zstd as was recommended on a previous issue, but still...
I was wondering if it's possible to obtain the chromosome and position by idx using pgenlibr, or if it is possible to add this feature? Thanks so much. The pgenlibr...
Dear Christopher, Thanks much for developing and maintaining this great software. Can I ask for a new feature for the `--score` function. Now it supports in a single pass score...
