plink-ng icon indicating copy to clipboard operation
plink-ng copied to clipboard

Plans to get pgenlibr on CRAN?

Open richelbilderbeek opened this issue 3 years ago • 2 comments

Dear @chrchang,

I was happy to find the pgenlibr R package to read .pgen files and I intend to use it in one of my packages.

The problem is that I intend to get my package on CRAN, where CRAN packages are only allowed to depend on CRAN packages.

Are there plans to get the pgenlibr R package on CRAN?

I would be open to help in a way, e.g. by adopting it in my package, but a standalone pgenlibr R package feels preferred to me, especially as -as far as I understand- the .pgen file format is not cast in stone yet.

Thanks for your reply and cheers, Richel Bilderbeek

richelbilderbeek avatar Sep 24 '21 13:09 richelbilderbeek

Yes, there's technically one part of the .pgen format that has not been fleshed out yet (multiallelic dosages), but that part is unimportant for most applications. I will work on it this weekend.

chrchang avatar Sep 24 '21 16:09 chrchang

@chrchang that would be amazing! Thanks so much!

richelbilderbeek avatar Sep 25 '21 14:09 richelbilderbeek

Ended up being delayed by far more than a weekend, but pgenlibr is now on CRAN.

chrchang avatar Jun 18 '23 02:06 chrchang