GraffiTE

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GraffiTE exiting at minimap due to "Unknown option: --no-home"

6

I've been trying to run GraffiTE on a cluster and am having it fail at the alignment step. Do you have any pointers on how I can getting it running?...

jamesdgalbraith

Hi Cristian, I was wondering if it is possible to have the polymorphic TE coordinates in all génomes and not only in the ref ? It s quite useful when...

RRebo

3_TSD_search output folder missing

2

Hello, First of all: thank you very much for the pipeline. I ran the command like this: nextflow run cgroza/GraffiTE --assemblies assemblies.csv --TE_library nrTREP20 --reference Bgt_genome_v3_16 --graph_method pangenie --genotype false...

Wicker-Lab

Question about setting own tmp dir

8

Hi~ Recently, I'm struggling with the problem that I have to set my own tmp directory while running the GraffiTE, because of the limited access authority in group server. I...

xxYaaoo

Inquiry about Integrating Minigraph-cactus into the Pipeline for Enhanced SV Analysis

3

Dear Guillaume Bourque's group, Firstly, I would like to express my sincere gratitude for your remarkable software. It is indeed a significant contribution to the field. I've been using your...

porkfan

[E::parse_cigar] CIGAR length too long at position 1 (274808464H)

13

Me again. Managed to get the software to run but it only ran for four minutes before hitting this CIGAR error. A quick google search suggests that the read lengths...

davidaray