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Question about setting own tmp dir

Open xxYaaoo opened this issue 3 months ago • 8 comments

Hi~

Recently, I'm struggling with the problem that I have to set my own tmp directory while running the GraffiTE, because of the limited access authority in group server. I used the command line ‘export NXF_TEMP=’ in my slurm script to set the tmp dir. However, the squeue showed that my task job was in normally running state, but the output dir contained nothing. I also tried the way you mentioned in the ‘important note' to revise the nextflow.config, but the slurm task showed error as the moment I sbatched my work. Any idea could figure my problem out?

Thank you so much!

xxYaaoo avatar Apr 20 '24 06:04 xxYaaoo