SCICoNE
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cbg-ethz
Single-cell copy number calling and event history reconstruction.
Hello SCICoNE team, Thank you very much for an amazing tool. I have managed to run the tool with our data and ended up with 4 clusters (0,1,-1,2). But my...
Thank you for your work on SCICoNE. Would it be possible to have some functionality to export the trees to a common format (e.g. Newick)? The current tree format seems...
Currently, in order to use the Python package, users need to install the C++ program from source themselves. Can we force the Python installation to also download and install the...
Make sure the return values, parameters and the exceptions thrown are mentioned for each method.
Right now it is set explicitly after the constructor is called in here https://github.com/anilbey/sc-dna/blob/19760ae2e9a606d0a4c53fc384310442dfeff84b/src/infer_trees.cpp#L189 here https://github.com/anilbey/sc-dna/blob/19760ae2e9a606d0a4c53fc384310442dfeff84b/simulations/run_simulations.cpp#L93 and here https://github.com/anilbey/sc-dna/blob/19760ae2e9a606d0a4c53fc384310442dfeff84b/simulations/Simulation.h#L84 Have a constructor overload for the overdispersed case and use it...