ZhipengCheng

@nfergu hi,is there some problem with my commit-branch?

Hi @nfergu ,i have some advice for [Genomic Analysis Using ADAM, Spark and Deep Learning](http://bdgenomics.org/blog/2015/07/10/genomic-analysis-using-adam/) to the people who want to reproduce the test .So i post all the changes...

Hi @nfergu ,i'm so sorry to open a new pull request just now.Because i didn't really know how to open a pull request before.I have been learning how to use...

Hi @timodonnell and @ryan-williams ,thank you very much , the shell informations i'm using are : ``` zhipengcheng@192$ cat /etc/shells /bin/sh /bin/bash /sbin/nologin /usr/bin/sh /usr/bin/bash /usr/sbin/nologin 08:32:50 ~/soft1/guacamole zhipengcheng@192$bash --version...

Thank you @arahuja ,it can run well when i using the b37 fasta file .

Hi @arahuja ,thank you, i have tried to run the command on spark local model firstly`./scripts/guacamole somatic-joint /home/zhipengcheng/file/tmp/dedup.bam --reference-fasta /home/zhipengcheng/file/ucsc.hg19.fasta --out /home/zhipengcheng/file/result/out.vcf`, the memory i'm using is 80g , the...

Hi @ryan-williams , i'm sorry i can't share the BAM because it belongs to one of my customers , and i can tell you someting about the BAM: it was...

Hi @arahuja and @ryan-williams , thank you ,now i want to run the command in local mode : `./scripts/guacamole somatic-joint /mnt/hgfs/D/shiyan/tmp/dedup.bam --bam-reader-api hadoopbam --reference /mnt/hgfs/D/shiyan/ucsc.hg19.fasta --out /mnt/hgfs/D/shiyan/result/out.vcf` using [the latest...

Ok @ryan-williams , i know it , and i have tried the command `./scripts/guacamole somatic-joint /mnt/hgfs/D/shiyan/tmp/dedup.bam --reference /mnt/hgfs/D/shiyan/reference-human/ucsc.hg19.fasta --out /mnt/hgfs/D/shiyan/result/out.vcf` in local mode. It runs well when the BAM file...

Hi @ryan-williams ,thanks for your advices ,the spark version is 1.6.1 and the java version is "1.8.0_101". I have ran the command successfully using the 7G BAM which generated the...