Caleb Lareau
Caleb Lareau
if not, try maybe specifying it as an absolute file path?
Hi, So we’ve added support for the ‘control’ sample under limited circumstances now to evaluate things. One of these facets is that you have to pre-define your peak set (rather...
Yea, with only 74 Loop PETs, the issue is coming with trying to fit the loop-associated model. The crash, while inelegant, is symptomatic of not having enough data to fit...
Hi, apologies for the delay. The tool will still be useful to aggregate abundances of PETs between two or more histone peaks (I've used this functionality myself quite often). However,...
Hi Michael, We did our best to document these here: http://hichipper.readthedocs.io/en/latest/content/Dependencies.html We will make it more explicit in future versions. Thanks for the feedback! > On Jun 14, 2018, at...
My initial guess would be that a sample as processed by the pipeline is somehow missing values needed for the QC report. Can you run with —keep-temp-files and then send...
Ah, good catch. I would agree that could be the problem. We've had chatter about removing the mitochondrial chromosomes from the restriction fragment file, which may solve this in part....
Can you post dim(s) after your first command? > On Jan 18, 2020, at 6:34 AM, FW wrote: > > Hi, > I don't understand that. How do you fix...
Could you provide the report and indicate which one you are comparing to?
I don’t see anything from the QC report that would cause this issue. Can you show me what’s in the output folder? > On Jun 12, 2019, at 10:32 AM,...