hichipper
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--macs2-string parameter: can I use --control?
Thank you again for this tool,
I'm trying to use the MACS2 parameter --control using Hi-C as input. However, I'm unsure how to proceed with the command to have the same effect as it has on regular ChIP-seq.
Can you please help me? What would be the input in this case? Would be the .validpairs of the Input?
Thank you for your time.