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--macs2-string parameter: can I use --control?

Open vidaletal opened this issue 5 years ago • 2 comments

Thank you again for this tool,

I'm trying to use the MACS2 parameter --control using Hi-C as input. However, I'm unsure how to proceed with the command to have the same effect as it has on regular ChIP-seq.

Can you please help me? What would be the input in this case? Would be the .validpairs of the Input?

Thank you for your time.

vidaletal avatar Jan 28 '20 14:01 vidaletal