Caleb Lareau
Caleb Lareau
Perhaps relevant: https://github.com/samtools/bcftools/issues/1166
I can get past the 45% build error by upfrading hts-lib to v1.11 but run into a different error if anyone has any ideas: ``` [ 56%] Building CXX object...
you want to specify the mitochondrial fasta is all. If you are using standard GRCh38, its actually built in (`-g hg38`). It's stalling out b/c you gave it the full...
Hey sorry it’s not clear what you mean getting stuck here. It looks like it’s working as planned… is there output in the snakemake log? On Mar 26, 2024, at...
Probably rm -rf the .snakemake folder and retry then? Caleb On Mar 26, 2024, at 1:32 PM, pxh251 ***@***.***> wrote: there's no output at all (no files generated, including any...
thanks for digging into this. maybe the best way is to take the min of the lengths of R1 and R2 in settings where they are not equal rather than...
Hi all, apologies for the delayed response-- these seem like two separate issues. @triciapark it looks like you are erroring out in the `remove duplicates` step-- do you have `java`...
Hi, this is a good question. Can you report back the number of non-zero peaks with PP signal? The tool doesn’t expect that all SNPs be scored (any good fine...
Can you share the version of the software being used? Does it work on the test data in the repository?
Hi, just curious if this issue resolved itself? I'm guessing it was a function of a missing R package?