ggpicrust2

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error with MicrobiomeStat

5

**Hello, Thank you for you interactivity in advance I've been using the same script since December 2023, and I've tested it on my dataset. However, after changing my PC and...

saassli21

pathway_errorbar nonspecific error

7

### Discussed in https://github.com/cafferychen777/ggpicrust2/discussions/73 Originally posted by **AbbiHern** November 22, 2023 When trying to generate pathway error bar plot, I'm getting a very unhelpful error. "Error in pathway_errorbar(abundance = ko_abundance,...

AbbiHern

pathway_annotation() long runtime, connecting to KEGG database

6

Question: Is there a, general, expected runtime for the KEGG database connection step of the pathway_annotation() command? This is my first time using the package, and I am passing (what...

erikpark

Error in ggpicrust2 (There are no statistically significant biomarkers in the dataset)

4

Dear Chen, Thank you very much for creating this useful analysis tool. I am starting to use the package to analyse my PICRUST2 result, however I have got this error...

erda712

The 'group1' or 'group2' column in the 'daa_results_df' data frame contains more than one group. Please filter each to contain only one group.

5

Hello @cafferychen777 , I have 2 datasets , I tested the script that is in #65 on the first and it worked nicely because when I print this command (daa_sub_method_results_df1...

saassli21

Installation issues with Rfast

2

Hi all, I'm having BIG issues trying to install ggpicrust2. I've addressed many of those (mainly related to the R and RStudio needed upgrade) but I'm clueless about the installation...

camcecc

ggpicrust2(): Error in `metadata[, matching_columns]`:

10

I runned this script: library(readr) library(ggpicrust2) library(tibble) library(tidyverse) library(ggprism) library(patchwork) # Load necessary data: abundance data and metadata abundance_file

WillErickson1

Error from pathway_errorbar

1

Good day, Chen! Thank you so much for creating this amazing tool! I encountered an error code, as shown below, and unfortunately, I'm unsure how to resolve it: ``` Error...

lingvv

ggpicrust on ITS : Error in `$<-.data.frame`(`*tmp*`, "description", value = character(0)) : le tableau de remplacement a 0 lignes, le tableau remplacé en a 1

5

I want to thank you for your interactive responses to all the published issues and the various codes that you provided. Thanks to your assistance, I successfully ran the pipeline...

SueFletcher

pathway_heatmap cannot reorder

1

### Dear Dr. Chen, # I want to reorder the pathway name by their classes belonging to. But it is not useful. Here is the code I used. p1% right_join(...

gaimingle10