ggpicrust2

ggpicrust2 copied to clipboard

ALDex2 issue

9

Using the following command daa_results_df

SRuwi

Hello @cafferychen777 All my pathway results are NA, please help me see how to solve the problem.  > daa_annotated_sub_method_results_df

Elixir0822

issue while running pathway_errorbar()

20

I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4) ko_abundance_file

DaliBAmor

The 'method' column in the 'daa_results_df' data frame contains more than one method.

1

**Describe the Bug** Wnen I use ggpicrust2 function, it always generates the error. Any help would be greatly appreciated. Here's my dataset including the "pred_metagenome_unstart.tsv" file and "metadata.txt" file. [pred_metagenome_unstrat.tsv.gz](https://github.com/cafferychen777/ggpicrust2/files/14833068/pred_metagenome_unstrat.tsv.gz)...

freemutation

Question about filtering features and groups

7

Hi, Thanks for creating this excellent package for analysing PICRUSt2 output data. I have been looking for something like this for a while now. I have run the analysis main...

pig-raffles

pathway_errorbar() : The 'method' column in the 'daa_results_df' data frame contains more than one method. Please filter it to contain only one method.

3

**Describe the Bug** Hello. I'm still new to this field, so I'm studying it little by little and referring to it often.The reason I'm commenting like this is because I...

IloveUKarna

Error in `guide_transform()`: ! <Guide> classes have been rewritten as <ggproto> classes.

3

R version 4.3.1. I cannot display the actual plots. It triggers an error: ```r Error in `guide_transform()`: ! classes have been rewritten as classes. ``` Here is a minimal reproducible...

antonkratz

undefined columns selected and ‘round’ not meaningful for factors

2

I can run ggpicrust2 with the provided example data (but not plot it, made a separate entry for that #101) but I am struggling to get it work with my...

antonkratz

curl_fetch_memory

4

Hi, I am having an issue in the pathway annotation in ggpicrust2. I have tried the other workflow with the same results. I'm not behind a firewall or proxy, I...

mccannpeter

add a title to errorbar and heatmap

9

Hello, Is there a way to add a title to my erorrbar and heatmap please ? p % column_to_rownames("pathway"), daa_results_df = metacyc_daa_annotated_results_df, Group = metadata$Environment, ko_to_kegg = FALSE, p_values_threshold =...

SueFletcher