Vladimir Gorshkov

Hi @rolivella, Thank you for using TRFP. I can confirm the error. The reason for it is, however not clear. I can see that the parsing library (the Thermo one)...

Hi @rolivella, I can confirm the same problem with files acquired on a different Eclipse. I am afraid the error stems not even from the parsing libraries, but from the...

Here is the comparison of two scan filters (scan 37) for the files you have shared. Tune 3.5: `ITMS + c NSI r d sa Full ms2 [email protected] [email protected] [100.0000-801.0000]`...

Thank you for the update @jesse-canterbury. @rolivella As an immediate solution, I will need to change the code to allow parsing of the files with invalid scan headers and hope...

Hi @rolivella, I have implemented a fix for the missing supplementary activation error. You can download and test the next beta version using this link: https://syddanskuni-my.sharepoint.com/:u:/g/personal/vgor_bmb_sdu_dk/EUq2DvQ3I_hEvf-N2_I3weUBCKeiRVeJNKv7sX0mmt2C7g?e=kRseht

The biocontainer repo will be updated only after the release, i.e. it will take some time more before it happens.

Hi @elliotfontaine, thank you for using ThermoRawFileParser. Internally RAW files use the same _analyzer type_ (`FTMS`) for all FT-enabled mass data (FTICR and Orbitrap in that regard). The `` element...

Hi @bernt-matthias, How do you get the release of TRFP? I tried with a clean conda environment (only mono=6.12.0.90 and the latest release downloaded from Github) and it works fine....

I looked a bit further into it. ---------- I can confirm that mono 5.14 raises an error when processing symlinked files, although the dll is in place. I will need...

### Mono 6 and Windows .NET Framework The vendor library cannot process links directly (that was the initial issue #108). After the fix, TRFP checks if the provided path is...