Vladimir Gorshkov

icon location Staff scientist at the Protein Research Group at the University of Southern Denmark working mostly in proteomics

Results 47 comments of Vladimir Gorshkov

Slow Conversion

Hi @ozgurdemir , it is not very clear how to answer your question, since it is not possible to locate the performance bottleneck from your description. Is it only slow...

ETciD and EThcD annotation

Hi @timosachsenberg , I am afraid I don't understand your question completely. ETciD is a "combination" of ETD and CID, while ETD and HCD. In TRFP it is represented as...

Error encountered when processing TMT SPS-MS3 data with IsobaricAnalyzer

Hi @jpfeuffer , I can comment on that matter, in the case of `ThermoRawFileParser`. The data on the first precursor in the list is obtained similarly to any other precursor...

Error encountered when processing TMT SPS-MS3 data with IsobaricAnalyzer

I forgot to mention, now that I know it can be negative, I will, certainly, try to handle it by TRFP. I am not sure, however, if it is better...

include charge state array

Hi @grandrea that will be scheduled for the next release

include charge state array

Implemented in 6ee904c

include charge state array

Particular details depend on your platform, but in general you should be able to compile it the following steps. 1. Clone the `dotnetcore` branch of ThermoRawFileParser repository, for example, `git...