long-read-pipelines
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broadinstitute
Long read production pipelines
Not consistent with best practices and will be a maintenance headache.
The [repo](https://github.com/ewels/MultiQC)
I'll periodically check which branches Github deem as stale, and assign authors to either rebase or remove the branches.
Functionality: A class encapsulating functions for plotting workflow data. Can create pdfs and svgs of violin plots, as well as create html files for bokeh scatter plots. These two types...
Need a task for fixing those non-critical errors (sample name inference, undefined INFO fields). For those critical ones, well...
Assigning to @kvg . Per discussion with GP, it's not as reliable. Once the automation script is updated, I'll remove the column on Terra.
(Sub-)Workflow to run winnowmap2. Not the best solution, need to incorporate Yulia's version here as well.
[PR](https://github.com/broadinstitute/picard/pull/1753) into Picard waiting for review rounds and (hopefully) approval. Then some extra wait time for the change to propagate into an official GATK4 release.
On the latest MASseq run, the 10x tool ran out of memory on a 16 gig machine. Increasing the ram is a quick bandaid, but I don't think it needs...
