cromshell

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QueuedInCromwell task status not recognized

1

With Cromwell 86, I got the following message from cromshell: WARNING Cromshell found the following unknown task status(es) ['QueuedInCromwell'], an unknown task status is a status that does not match...

notestaff

aliasing submissions when `submit`ting

1

a nice to have feature, IMO.

SHuang-Broad

Local pip install fails

1

If I run ```console git clone [email protected]:broadinstitute/cromshell.git cd cromshell pip install -e . ``` it fails to install. I see this ```console Obtaining file:///Users/sfleming/Documents/Github/cromshell Installing build dependencies ... done Checking...

sjfleming

bshifaw

Cromshell2.0 crashes for server that worked on cromshell 1

1

When I try to connect to a cromshell server with that I could contact with cromshell 1 by I get the following exception: ``` 2023-07-31 17:01:08,951 cromshell.utilities.http_utils ERROR Failed to...

jamesemery

Add fetch-logs and enable Azure log fetching

1

Refracted Log command such that code is broken into smaller functions Added option to download logs Added Azure components such that files from azure storage containers can be read or...

bshifaw

bshifaw

pip installed cromshell may have a dependency issue

1

I just pip installed cromshell (python 3.11), and ran into the following error ``` Traceback (most recent call last): File "/usr/local/bin/cromshell", line 5, in from cromshell.__main__ import main_entry File "/usr/local/lib/python3.11/site-packages/cromshell/__main__.py",...

SHuang-Broad

I have noticed some connectivity issues for the python cromshell environment with some cromsehll servers that otherwise work on the older cromshell... however i have noticed that I can no...

jamesemery

Description: When running cromshell, the following error occurs: "TypeError: Descriptors cannot not be created directly. If this call came from a _pb2.py file, your generated code is out of date...

bshifaw