cromshell
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broadinstitute
CLI for interacting with Cromwell servers
`cromshell` really needs a command that can print and/or download logs for JUST the failed tasks. Currently we have to either download all logs or grep through the metadata for...
Fairly low-priority request: can we make the Cromshell2.0 status command take multiple workflow IDs on the command line like Cromshell1.0 does? It's quite convenient to be able to check on...
`cromshell list -u` is supposed to check completion status of all unfinished jobs. However sometimes it reports incorrect values while `cromshell status` reports the correct ones. Even after running `cromshell...
`womtool validate`s based on syntax of the WDL, but the command block—a lot of times just bash—sometimes have errors and I'd guess few people run linters on the the command...
When provided an alias that doesn't exist, I see ``` Sub-Command: execution-status-count cromshell execution-status-count: invalid missing flag for argument: HiFiasm_medium_small Try `cromshell -h' for more information. ``` Where `HiFiasm_medium_small` was...
E.g. when a particular execution failed, the command helps you parse the json and pin down the location where the failure happened. Not asking cromshell to be intelligent in figuring...
The `cost` sub-command assumes a default big query/google cloud project. We need to add a check in the code to see if it's set and gracefully fail if it isn't....
example: `cromshell status ` prints out information using the UUID, but it would be nice if an alias for that UUID is available from the TSV file.
brew install broadinstitute/dsp/cromshell --> does not install womtool conda install cromshell -c bioconda --> does install womtool Is that the desired behavior?