cromshell
cromshell copied to clipboard
broadinstitute
CLI for interacting with Cromwell servers
Executions status count should only check subworkflows if -x is enabled, but by default it downloads all the metadata for subworkflows. Because of the bug in #107 it wasn't displaying...
Something like ``` cromshell slim-metadata ${JOB_ID} --ft "status" "Fail" ```
Ideally, most of the output of this script should go to stderr, so you can script it out easily. There are a couple of calls to `echo` embedded in the...
If you call notify on your local machine and the remote machine has a different server config, the remote (incorrect) serve config will be used and you'll end up polling...
While developing new workflows, I often run one workflow per sample. Checking on the status of each sample is currently a bit painful because if a workflow fails, I need...
to tell user which version of cromshell is currently in use.
When cromshell is run it should check github for the latest release. If that release is newer than the cromshell that is being run, a message should appear to the...
We desperately need this. I'm lazy and typing the same commands over and over is hard on my poor fingers.
list-outputs seems to be broken: ``` ~/cromshell/cromshell list-outputs e9da649f-807e-4ddc-8e80-4b63192ae1d3 Sub-Command: list-outputs Using workflow-id == e9da649f-807e-4ddc-8e80-4b63192ae1d3 Using workflow server URL == https://cromwell-v39.dsde-methods.broadinstitute.org __ .,-;-;-,. /'_\ _/_/_/_|_\_\) / '-=/\ `/_/====/_/-'\_\ "" ""...
As much as I love the walking turtle, I also like to run cromshell within `watch` and that doesn't play nice with the animation....