hts-nim-tools

hts-nim-tools copied to clipboard

trying `hts_nim_tools count-reads <bed> <bam>` only return 0 counts

4

Do we need specific version hts-nim-tools to get this working? I use `conda install -c conda-forge -c bioconda hts-nim-tools` to install the hts-nim-tools. My bed files are in the folllowing...

ipstone

example tools

12

It would be nice to have a suite of example tools to further show off the syntax and utility of hts-nim. Please leave a comment here with a description. The...

brentp

new tools: split vcf

1

from @davemcg's post: split a vcf into n pieces: ``` hts-nim-tools vcf-split -n 10 --prefix split $vcf ``` will create split.1.vcf .. split.10.vcf.

brentp