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Published 20 hours ago • verified publisher icon brentp

trying `hts_nim_tools count-reads <bed> <bam>` only return 0 counts

Open ipstone opened this issue 5 years ago • 4 comments

Do we need specific version hts-nim-tools to get this working? I use conda install -c conda-forge -c bioconda hts-nim-tools to install the hts-nim-tools.

My bed files are in the folllowing format:

chr5    38702540        38722603
chr12   98136449        98156541
chr8    91644923        91665040
...

ipstone avatar Jun 17 '19 22:06 ipstone