Brent Pedersen

you can paste t hem here, or just email them to [email protected], should be 1 read, 4 lines, in each file

Hi, as you've seen, d4 uses the entire read and does not consider cigar operations. I'd likely accept a PR with tests to modify the code [here](https://github.com/38/d4-format/blob/master/d4-hts/src/lib.rs#L36-L82) You can also...

70K will probably be pushing it. It is still n^2 in memory and time, it's just fast and efficient. I would think 20K would be OK, but please let me...

I didn't know about cuking, that's very cool! Indeed it seems like a good problem for GPU

Hi, I think the best way is to create it yourself using `slivar make-gnotate`. Since everyone want's different fields, it's not as useful to create a minimal set and since...

I'd accept a PR to have this shown at the bottom of the html. :)

Hi Phil, does your last expression not work as expected? The expressions are javascript so || should work fine.

I see. I think you can use: ``` ancestor.every(function(a) { a.AD[1] < 1}) && clone.some(function(c) { c.AD[1] < 0 }) ``` that expression probably doesn't do anything useful, but shows...

is this on a cluster? is it possible you are running out of memory?

Hi, you won't need much memory at all for that, a few MB. If you use a -g gnotate file then you'll need enough to hold a single chromosome in...