Brent Pedersen

yes, I saw that and inim from @stisa, now that there are ggplots and dataframes, the notebook would a be a boon.

I'm not very involved in the nim community, so I'm probably missing something, but I think these issues would be much more useful if there were fewer and each had...

see: http://blog.ralch.com/tutorial/golang-ssh-connection/

Hi, can you try with v0.2.3, the latest version to make sure this hasn't been fixed?

you can download the binary from here: https://github.com/brentp/duphold/releases/tag/v0.2.3

just download it: ``` wget https://github.com/brentp/duphold/releases/download/v0.2.3/duphold chmod +x ./duphold ./duphold -h ```

you could also check that the smoove file is valid. and if you can provide the full command you ran and/or a small file so i can reproduce the error,...

DHSP was supposed to be a little more refined than what the caller (like lumpy) or the genotyper (like svtyper) would report. but it still has problems for deletions. I...

you mean to still send a CRAM/BAM, but to evaluate every site in a GVCF? I suppose that's possible, but duphold is for larger events and most gvcfs don't contain...

Since DHGT is not the primary feature of duphold (primary is depth annotation of SVs), I'm less inclined to work on this. It's also not clear to me what genotype...