Brent Pedersen

what does this mean: > I can't find the variants of Insertions ? Do you mean duphold isn't annotating your insertions? Can you show a variant VCF line output from...

Here is fine, I just don't have enough information to help you.

what would be reported for insertions? duphold is mostly depth-based, but it could potentially extract other information.

This makes it harder to use bincode and on first attempt, the file-size was not much smaller. Can also look into writing a custom serializer for bincode.

Hi, I use: ``` cargo build --all --target x86_64-unknown-linux-gnu --release ``` with: ``` [build] rustflags = ["-C", "target-feature=+crt-static"] ``` in `.cargo/config` That seems to work for most users AFAICT.

Did you see this: https://github.com/erickt/rust-zmq#vendored-build

you should be able to get ndarray-linalg built statically: https://crates.io/crates/ndarray-linalg/0.13.1-alpha.1

hmm. that is odd. you could use `tiwih setref` to set the 'N' to 'T' and see if that helps. Are these manta calls?

the DHSP should be a conservative (but fairly accurate) count of discordant reads that support the event. if you have an example where that's not the case, I'll take a...

Hi Lim, given the variability in sequencing coverage, it's hard to call exact copy-number. You can certainly do some rounding or estimation from the duphold values, but beyond copy-number 4...