Brent Pedersen

glad to hear it's working.

I'll add this for the next release. We can probably reduce with some of these: https://github.com/johnthagen/min-sized-rust

Hi, slivar will give a warning about multiple alleles. You should decompose your VCF before using with slivar. You expression otherwise is, I think fine, but it might be easier...

Hi Eduardo, I don't see an obvious way to do that. Maybe you could somehow send the header and the rest of the file to stdin and then open with...

this likely means your bam file is truncated.

Hi. No, it does not.

you need to compile with `nim c -d:d4 ... mosdepth.nim`

it is dynamically linking d4 so you need to build and install that.

Hi, for issue1 you would instead use: ``` [[postannotation]] fields=["CTS_ID","CGS_ID","CNC_ID"] name="ID" op="lua:select_id" ``` # issue2 This just means that field is not found in some rows of the VCF. It's...

I see, there's a weird logic error in the code. You must be on a machine with few CPUs, right? You can do : ``` ln -s $your.vcf.gz $your.vcf.bgz ```...